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csv-bivariate-normal-distribution: added

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Martin Thoma 2015-09-08 17:17:12 +02:00
parent e7f5c73e2a
commit 47e4e3113a
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SOURCE = csv-bivariate-normal-distribution
DELAY = 80
DENSITY = 300
WIDTH = 512
make:
pdflatex $(SOURCE).tex -output-format=pdf
make clean
clean:
rm -rf $(TARGET) *.class *.html *.log *.aux *.data *.gnuplot
gif:
pdfcrop $(SOURCE).pdf
convert -verbose -delay $(DELAY) -loop 0 -density $(DENSITY) $(SOURCE)-crop.pdf $(SOURCE).gif
make clean
png:
make
make svg
inkscape $(SOURCE).svg -w $(WIDTH) --export-png=$(SOURCE).png
transparentGif:
convert $(SOURCE).pdf -transparent white result.gif
make clean
svg:
make
#inkscape $(SOURCE).pdf --export-plain-svg=$(SOURCE).svg
pdf2svg $(SOURCE).pdf $(SOURCE).svg
# Necessary, as pdf2svg does not always create valid svgs:
inkscape $(SOURCE).svg --export-plain-svg=$(SOURCE).svg
rsvg-convert -a -w $(WIDTH) -f svg $(SOURCE).svg -o $(SOURCE)2.svg
inkscape $(SOURCE)2.svg --export-plain-svg=$(SOURCE).svg
rm $(SOURCE)2.svg

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Compiled example
----------------
![Example](csv-bivariate-normal-distribution.png)

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#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Create samples for bivariate distribution"""
from numpy.random import multivariate_normal, seed
def create_data(n):
means = [0.0, 0.0]
cov = [[1.0, 0.7], [0.7, 4.0]]
seed(0)
samples = multivariate_normal(means, cov, n)
with open("data.csv", "w") as f:
f.write("x,y\n")
for datapoint in samples:
f.write("%0.4f,%0.4f\n" % tuple(datapoint))
def get_parser():
from argparse import ArgumentParser, ArgumentDefaultsHelpFormatter
parser = ArgumentParser(description=__doc__,
formatter_class=ArgumentDefaultsHelpFormatter)
parser.add_argument("-n",
dest="n",
default=5000,
type=int,
help="Number of points to generate")
return parser
if __name__ == "__main__":
args = get_parser().parse_args()
create_data(args.n)

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\documentclass[varwidth=true, border=2pt]{standalone}
\usepackage[utf8]{inputenc} % this is needed for umlauts
\usepackage[ngerman]{babel} % this is needed for umlauts
\usepackage[T1]{fontenc} % this is needed for correct output of umlauts in pdf
\usepackage[margin=2.5cm]{geometry} %layout
\usepackage{pgfplots}
\pgfplotsset{compat=newest}
\usetikzlibrary{plotmarks}
\begin{document}
\tikzset{mark options={line width=0.5pt}}
\begin{tikzpicture}
\begin{axis}[
width=7.5cm, height=15cm, % size of the image
enlarge x limits=0.05,
enlarge y limits=0.05,
xmin = -5,
xmax = 5,
ymin = -10,
ymax = 10,
% xlabel=x,
% ylabel=y
]
\addplot[scatter,
only marks,
mark=*,
mark size = 1,
point meta=1,
]
table [x=x, y=y, col sep=comma] {data.csv};
\end{axis}
\end{tikzpicture}
\end{document}